PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009791

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 358aa MW: 39630.5 Da PI: 8.0855

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58682575	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.6e-38	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s+ntkfCyynn +++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k++s Lsa009791 66 PDKILPCPRCESMNTKFCYYNNSNVNQPRHFCKSCQRYWTAGGTMRNMPVGAGRRKKKNTS 126 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	63	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-31	68	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.624	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MTDPGIILFG KKIGSLETPK ISDSPPFAVA DGGDNGFPTD DSPKTPSIDE DDSPEKHQTT 60 GGLKKPDKIL PCPRCESMNT KFCYYNNSNV NQPRHFCKSC QRYWTAGGTM RNMPVGAGRR 120 KKKNTSSDCR FIISHEAFDV GPQIEFAAEN SDGVYNTSRQ PKVLSFTPNS PICRGKESGD 180 DCSSGTTTVV SSNSVVEKPQ ENNGFHSQVH WIPGTPWSYN PWVPMQIPTG YPPIPFYPPP 240 YWNSVSWLPP ATSAPNYSIL GKHSSDRESI NPIEEPKKQK NSILIPKTLR IDDPDEAAKS 300 SIWATLGIKN ENCSRRDLFK GFEAKGDEKK KQPITEPSLL LQANPAAFSR SLCFQERA

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MTDPGIILFG KKIGSLETPK ISDSPPFAVA DGGDNGFPTD DSPKTPSIDE DDSPEKHQTT  60
GGLKKPDKIL PCPRCESMNT KFCYYNNSNV NQPRHFCKSC QRYWTAGGTM RNMPVGAGRR  120
KKKNTSSDCR FIISHEAFDV GPQIEFAAEN SDGVYNTSRQ PKVLSFTPNS PICRGKESGD  180
DCSSGTTTVV SSNSVVEKPQ ENNGFHSQVH WIPGTPWSYN PWVPMQIPTG YPPIPFYPPP  240
YWNSVSWLPP ATSAPNYSIL GKHSSDRESI NPIEEPKKQK NSILIPKTLR IDDPDEAAKS  300
SIWATLGIKN ENCSRRDLFK GFEAKGDEKK KQPITEPSLL LQANPAAFSR SLCFQERA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730031.1	0.0	cyclic dof factor 3-like
Swissprot	Q8LFV3	3e-72	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A2J6KNZ1	0.0	A0A2J6KNZ1_LACSA; Uncharacterized protein
STRING	PGSC0003DMT400050273	4e-94	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	8e-66	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]