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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Lsa009950 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family | WRKY | ||||||||
| Protein Properties | Length: 233aa MW: 26885.2 Da PI: 5.0747 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 90.2 | 1.6e-28 | 44 | 101 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D ++WrKYGqK++kgs++pr+YYrC+++ +C++kk+ve +++d ++++itY+++Hnh+
Lsa009950 44 DCWSWRKYGQKPIKGSPYPRGYYRCSTSkSCSAKKQVELCRTDASMLIITYTSTHNHP 101
99***********************9988****************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 2.3E-29 | 34 | 103 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 29.275 | 37 | 103 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 2.22E-24 | 40 | 103 | IPR003657 | WRKY domain |
| SMART | SM00774 | 2.5E-31 | 42 | 102 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 1.8E-23 | 44 | 101 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 233 aa Download sequence Send to blast |
MFPTILQMFR LPRKGRKAAE KIVVTVKLEE NEGKKRSENS SSCDCWSWRK YGQKPIKGSP 60 YPRGYYRCST SKSCSAKKQV ELCRTDASML IITYTSTHNH PDPTLPKKPK TKILHDSISE 120 TNTAPDPLDQ ENENQKPVTT IAVEDEDATT CTENDNFHYI QTPEDETRLT LNLENTFFDE 180 EPLSYPNLMT FSAPKTEEND FYDELEELPM SSSSFKIFMR SNFFEERVLV QPP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5w3x_B | 2e-20 | 44 | 104 | 18 | 80 | Disease resistance protein RRS1 |
| 5w3x_D | 2e-20 | 44 | 104 | 18 | 80 | Disease resistance protein RRS1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023753706.1 | 1e-173 | probable WRKY transcription factor 65 isoform X2 | ||||
| TrEMBL | A0A2J6M0Q3 | 1e-167 | A0A2J6M0Q3_LACSA; Uncharacterized protein | ||||
| STRING | VIT_07s0005g01520.t01 | 9e-78 | (Vitis vinifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G29280.1 | 2e-34 | WRKY DNA-binding protein 65 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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