PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009952
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ZF-HD
Protein Properties Length: 192aa    MW: 22344.1 Da    PI: 9.6712
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58672618PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer20.88.9e-072154659
  ZF-HD_dimer 46 CgCHRnFHRrevee 59
                 C+CHRnFHR+e e 
    Lsa009952  2 CNCHRNFHRKEIEG 15
                 ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.7E-19105178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-29111178IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-27117173IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
XCNCHRNFHR KEIEGEIHHH HHPVSCDYNY HSAPRIEVGN GRLQGHHHHR GILGRESYGY  60
NHNHAGVLVP SRAPLPLIMS YDMGIGSFPS ESDHELEDGG GFMNRHHPPL QPHQIVKKRF  120
RTKFTEEQKE KMLSFAEKVG WKIQKQEESV VQQFCQELGI KRRVLKVWMH NNKLNLAKKI  180
NPVPINPQNQ VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-241181731873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023738137.11e-140zinc-finger homeodomain protein 3-like
SwissprotO647222e-41ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2J6K5Z91e-139A0A2J6K5Z9_LACSA; Uncharacterized protein
STRINGcassava4.1_013112m1e-63(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-41homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]