PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010052
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 659aa    MW: 73407 Da    PI: 7.4867
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693449PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.7e-06444464525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C++++  G+C++G+ C F+H
  Lsa010052 444 PCNNYLSKGFCPRGSDCMFSH 464
                7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0046385411IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6385410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765385412IPR000571Zinc finger, CCCH-type
SMARTSM003560.32414440IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.183414438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164439467IPR000571Zinc finger, CCCH-type
SMARTSM003560.054442466IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5443468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5444466IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
LTESLVDECD DGEGRNCEKA EAAFXIDPAS ELTATVTMQP MERSEIGTLE KIPIWPTNPS  60
TVNRRRRPLR SRTVDTLLHI LSVCYADSSH ITQNSDKDDT HIESVTKDDV LFTCTNITTN  120
DSEHQEETNV DETRVILGTQ EESLCNTNLL VEPIEQDHNI SEESLDLSSL HLDTNKDVEE  180
GEISGEFTNL VPEDNDVESV DKTGSEEHED FTGINSGFEK NNSLTLTPLS INKADDIGKD  240
TTVVISKTKR NLVDYSEIAL HGKSTVSANN LINNATKNQD FGFPIKDKCA QNNKKRQRSC  300
TDEKRTNKKA KKSVDQSTFP EGLTKTGENP EDASANKDAD TKKKEKRVLT AERKAKKKRK  360
EKIKRAEKNR KLGVKRLKLQ PVIKEKKIIY CRHYINGRCH EGENCKFSHD TTPLTKSKPC  420
CHFARHSCMK GDECPFDHQL SKYPCNNYLS KGFCPRGSDC MFSHEAQPSE ASLNESTSEQ  480
KPSSKLQINN HTASSPKPSV QIQPPKGVTF ISREKIDTKP KSSPQPPKGI SFLSQEKLPL  540
ETQSPPKVNS EREMTKTPPE IPRGINFLSF GKKHSDGGFG FSFKIGKSPL SKPEGIIVNV  600
DDGVKAVTQI DNNDKIRTNS EPPARKPMPV LPFLSSTSRR TLESTLAFAA KFDSGVKGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341359KKKEKRVLTAERKAKKKRK
2352360RKAKKKRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756958.10.0zinc finger CCCH domain-containing protein 65
TrEMBLA0A2J6MH290.0A0A2J6MH29_LACSA; Uncharacterized protein