PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010100
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TALE
Protein Properties Length: 298aa    MW: 33645 Da    PI: 6.4487
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-39260PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.6e-072492802354
                SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                +yp+++++++L +++gL+ +q+ +WF N+R +
  Lsa010100 249 PYPTEDDKAKLVEETGLQLKQINNWFINQRKR 280
                8*****************************87 PP
2ELK25.14e-09201222122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK +L++++++++ ++++E++
  Lsa010100 201 ELKIELKQGFRSKIEDVREEIL 222
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.6E-203276IPR005540KNOX1
PfamPF037907.8E-183475IPR005540KNOX1
SMARTSM012563.7E-2388143IPR005541KNOX2
PfamPF037912.8E-1891142IPR005541KNOX2
PROSITE profilePS512139.097201221IPR005539ELK domain
SMARTSM003892.3E-7223288IPR001356Homeobox domain
SuperFamilySSF466895.13E-14224289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-23228287IPR009057Homeodomain-like
CDDcd000861.54E-9239285No hitNo description
PfamPF059201.0E-17241280IPR008422Homeobox KN domain
PROSITE profilePS5007110.803249284IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MQEQGLGMIG GSGGIGGGFT DMAVSLSGDQ NRQLKAEIAN HPLYEQLLSA HVACLRVATP  60
IDQLPLIDAQ LSQSHHLLRS YIADHHNQSL SPHDRQDLDN FLAQYLLVLC SFKEQLQQHV  120
RVHAVEAVMA CREIEHNLQA LTGITLGEGS GATMSDDEDE MPMDFSLDQS GGMDGGHDMM  180
GFGPLLPTES ERSLMERVRQ ELKIELKQGF RSKIEDVREE ILRKRRAGKL PGDTTSVPKD  240
WWQQHSKWPY PTEDDKAKLV EETGLQLKQI NNWFINQRKR NWHSNSNSMT ALKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277297RKRNWHSNSNSMTALKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772105.10.0homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-171KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A2U1MLU90.0A0A2U1MLU9_ARTAN; TALE protein
STRINGEOY245901e-180(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-159KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]