PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010140

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 261aa MW: 28674.8 Da PI: 5.427

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58683363	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.5e-11	143	190	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Lsa010140 143 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 190 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.80E-10	137	194	No hit	No description
SuperFamily	SSF47459	5.89E-18	137	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-18	139	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	139	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-8	143	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	145	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDPPIINETS FSAANPSSYS LTEIWPFSSI NGGGNEGLGL KMGSSFINGF VEPGNNRDEE 60 SSVTEQSGGG RKRRDANSED ESSKLVSTSS GNDLSNLNGK RTKMSESKDE FSGLKVDGEN 120 SKPSEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKALVLD 180 EIINYIQSLQ HQVEFLSMKL EAVNTRMHSP IEGFPTKDIG HPQPFDAAAL LFGSQAAREY 240 GQESQPEWLH MQLGSSFERA T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023734257.1	0.0	transcription factor bHLH79
Swissprot	Q9LV17	3e-82	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2J6KEF6	0.0	A0A2J6KEF6_LACSA; Uncharacterized protein
STRING	XP_008453158.1	1e-124	(Cucumis melo)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]