PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010154
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 238aa    MW: 27294.4 Da    PI: 4.7014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58672944PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015130151323
                ETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                C+ Cg +F +  +L+rH+ t H
  Lsa010154 130 CSPCGIVFQDMRELERHLATfH 151
                777***************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.4951386IPR001739Methyl-CpG DNA binding
SuperFamilySSF541719.48E-71868IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.101.2E-62189IPR001739Methyl-CpG DNA binding
PfamPF014291.4E-52172IPR001739Methyl-CpG DNA binding
PROSITE profilePS501578.746128156IPR007087Zinc finger, C2H2
PROSITE patternPS000280130151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
QGEWCGRSER RKVVDAAEFV KALPIDWKIE LALRRRAGLH SIYCRSYVSP SGEHFKSCKD  60
AAIYLKNQSL ITDAHSEEGQ MRQTENGFHT VPTFEVNGVE DSSVVEVEED VDWSTTGELY  120
DVKVSTLIEC SPCGIVFQDM RELERHLATF HKETTRRFDL PSGTRAFEKH ADMDLGNEEQ  180
EEVEIINERF KTHCTWCNKE FICEPVDTET MEDASGFMCQ PCKDKLCGAF XKEFVKVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023745878.11e-174uncharacterized protein LOC111894041
TrEMBLA0A2J6JPB51e-172A0A2J6JPB5_LACSA; Uncharacterized protein