PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010176

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 217aa MW: 25304.3 Da PI: 7.3235

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58674906	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Lsa010176 83 FECQYCFKEFVNSQALGGHQNAH 105 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-4	78	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.24E-6	80	110	No hit	No description
PROSITE profile	PS50157	11.074	83	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MGKKVCHDLL SSTWEEGDAR DQLSTQTYVE KKLKIFGFEL QHTSLDESTI KTNHLRPTEG 60 EESVNSSSTT IEKNDLPTEV KKFECQYCFK EFVNSQALGG HQNAHKKERL KKKRLQLQAR 120 RERINYYLQP YTHNKHGMNF DFHGYYDSEF ESNISFSRYD DDLLSFRDPC NFTLTHVDRS 180 RGNYIPVSMK PAPRVVELKQ NHADLDLQLS LSSNSIM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023734469.1	1e-163	zinc finger protein 5-like
TrEMBL	A0A2J6KDZ8	1e-162	A0A2J6KDZ8_LACSA; Uncharacterized protein
STRING	EOY00328	1e-48	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	3e-11	zinc finger protein 5