PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010229

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 222aa MW: 23967.5 Da PI: 9.2274

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58669226	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.2e-10	195	222	5	32
CHHHCHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLe 32 +r +r++kNRe+A rsR+RK+a++ eLe Lsa010229 195 RRHKRMIKNRESAARSRARKQAYMNELE 222 689************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	8.657	193	222	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.01E-6	195	222	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.1E-8	195	222	No hit	No description
Pfam	PF00170	2.7E-8	195	222	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.20E-17	195	222	No hit	No description
PROSITE pattern	PS00036	0	198	213	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
SDHSGCGGDD VNNLNTNHHN LNRASRRSTT LSSSSSSTTS SNHSPFSAPL SVNQIRSPNA 60 TRTMEEVWKD INLSTTNHPA DGNKGYRGFI LQDFLAKPFS NNDTPTTLSS PGYGSPSPPP 120 PPPPPVSQPS MLLNLNSGPD QLNFLVDGPT RTVCPLDVPF DHVMGSSNSS SGLLGQSIGG 180 MRMLPETDRI GGGERRHKRM IKNRESAARS RARKQAYMNE LE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023739549.1	1e-163	bZIP transcription factor 27-like
TrEMBL	A0A2J6MBC3	1e-161	A0A2J6MBC3_LACSA; Uncharacterized protein
STRING	XP_010266024.1	1e-27	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	1e-13	bZIP family protein