PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010316

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WRKY

Protein Properties

Length: 269aa MW: 29395 Da PI: 7.5611

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-46831	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103	1.7e-32	185	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ +++++ei+Y+g+H h Lsa010316 185 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERNL-EGHITEIVYKGNHSHA 241 8**************************************.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.0E-28	175	243	IPR003657	WRKY domain
PROSITE profile	PS50811	22.378	179	243	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-24	180	243	IPR003657	WRKY domain
SMART	SM00774	8.3E-34	184	242	IPR003657	WRKY domain
Pfam	PF03106	3.8E-24	185	240	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MASSGGSLNT STTTSQYPPF LFSTSFSDLI ASNTGEDPNW GFFSGGGGGG GGGGESPKPT 60 PTPFSPSAFL STPTGLNQNQ FLDSPFFPFN SNIVPSPTTG SFSGLDFKDE ERTYSNFSFQ 120 SQARPLASMA SIKMEEQVKT QPQQWGKQTD FTSEINKNKS ESTQSVQTQY VSDPSQAVKD 180 QTRLEDGYNW RKYGQKQVKG SENPRSYYKC TFPNCPTKKK VERNLEGHIT EIVYKGNHSH 240 AKPQNAKKSS SNSYSEAPIE SNHFDSSAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-16	184	243	14	74	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000250\|UniProtKB:Q6QHD1}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000269\|PubMed:16919842, ECO:0000269\|PubMed:25110688}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023769012.1	0.0	probable WRKY transcription factor 26
Swissprot	Q6B6R4	1e-42	WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBL	A0A2J6L2C7	0.0	A0A2J6L2C7_LACSA; Uncharacterized protein
STRING	EMJ09489	2e-54	(Prunus persica)
STRING	GLYMA02G39870.1	2e-54	(Glycine max)

Publications ? help Back to Top
Basu S,Roychoudhury A Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance. Biomed Res Int, 2014. 2014: p. 706890 [PMID:25110688]