PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010327
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 288aa    MW: 32312.9 Da    PI: 6.0413
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685260PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.8e-28100160259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK++ g++fprsYY+C+++   +C ++k+v++++edp+v+eitY+g H+++
  Lsa010327 100 NDGYSWRKYGQKDILGAKFPRSYYKCSYRkvqKCLATKQVQKTDEDPTVFEITYRGIHTCN 160
                8***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-2794160IPR003657WRKY domain
SuperFamilySSF1182902.35E-2499160IPR003657WRKY domain
SMARTSM007743.5E-3899161IPR003657WRKY domain
PfamPF031066.4E-26100159IPR003657WRKY domain
PROSITE profilePS5081120.243100157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAKQLRLNLD SAEAREFLIE KILSSYDKAL FVLKSAGQPR ASPLPESSLP KSSITTSSPQ  60
STEYEFEFGQ NVASKKRKAS TPWDNEVKIL SDNEIEGNAN DGYSWRKYGQ KDILGAKFPR  120
SYYKCSYRKV QKCLATKQVQ KTDEDPTVFE ITYRGIHTCN GVAQSALPPP PSPEKHEIKP  180
THHHHQLTTP NAGENFSNPR ANLTVNTWDL GCTLPSSHSI PPTVFEFNDN DFHPLNFPNH  240
FDEELLQGYS PSFISPATSE SNYFTDWASS SSLDLPKDAA DLFPDFMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1798159768OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770179.10.0probable WRKY transcription factor 41
TrEMBLA0A2J6KZS70.0A0A2J6KZS7_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-44WRKY family protein