PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010336
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 330aa    MW: 37010.7 Da    PI: 7.2234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683034PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv +++ +G g+W+++++  g+ R++k+c++rw +yl
        Lsa010336 17 RGLWSPEEDEKLVSYITSHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 64
                     788*******************************************97 PP
2Myb_DNA-binding49.21.2e-1570112145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++ +E  l+vd+++ lG++ W+ Ia++++ gRt++++k++w+
        Lsa010336  70 RGSFSSQEATLIVDLHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 112
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-26867IPR009057Homeodomain-like
PROSITE profilePS5129424.6631268IPR017930Myb domain
SuperFamilySSF466893.03E-2814111IPR009057Homeodomain-like
SMARTSM007171.3E-121666IPR001005SANT/Myb domain
PfamPF002491.3E-151764IPR001005SANT/Myb domain
CDDcd001671.86E-112064No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2368119IPR009057Homeodomain-like
SMARTSM007172.5E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129418.88269119IPR017930Myb domain
PfamPF002492.0E-1370113IPR001005SANT/Myb domain
CDDcd001672.08E-1072112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGHGGGHTCC NKQKVKRGLW SPEEDEKLVS YITSHGHGCW SSVPKLAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSSQEATL IVDLHRILGN RWAQIAKHLP GRTDNEVKNF WNSSIKKKLL  120
AHSHLSTHSL ATTFTNPKTT NIHAALSGEH QYYESLFDAN PNVLSPYQHH MNHDHDHLVH  180
ASPAAIGQPP VVNLVKCFDI DPTPNLPPLP QSFIVNSSSV FDHEFPTMEF LMNSYEHNTL  240
KSENYDIILA QNSDHDNSII PFKLGDQTNN IELTTNITTQ PLVNSHDLDP PASSQTEYLE  300
AFIPNFISSS SPPPSLVLPQ FMVSKVRSIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29171197108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759988.10.0transcription factor MYB26-like
TrEMBLA0A2J6LM660.0A0A2J6LM66_LACSA; Uncharacterized protein
STRINGAES678241e-78(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-71myb domain protein 26