PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010345

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 377aa MW: 42488.8 Da PI: 7.0701

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58686371	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-45074	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.3e-33	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Lsa010345 42 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	40	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-17	41	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-24	42	97	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-10	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-24	144	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MYHHHHQGKD IQSSSRMSIT PDRHLFLQGG GDSGLVLSTD AKPRLKWTPD LHERFIEAVN 60 QLGGADKATP KSVLKLMGIQ GLTLYHLKSH LQKYRLSKNL YRQTNSGGTN KVDMVAPTGD 120 DIGETNGSHM SSSSVFPQTN KNLQISEAIQ MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL 180 QSVLEKAQET LGSQNLGTVG LEAAKVQLSE LVSKVSTHCL NSTFPGIKDV SIQTNQPTDC 240 SIDSCLTYCE GQQNEQDMMG LTLLKSKKVD NEPENVWCED TNRNKKFDLS MSVGGLKTSE 300 WNTSRSYTEE RFMDRDEEAI LMNQNNQKKT HSVKLEKVEM SQKFQLPYFG QKLDLNVHDG 360 NDAASSHKQF DLNGLSW

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MYHHHHQGKD IQSSSRMSIT PDRHLFLQGG GDSGLVLSTD AKPRLKWTPD LHERFIEAVN  60
QLGGADKATP KSVLKLMGIQ GLTLYHLKSH LQKYRLSKNL YRQTNSGGTN KVDMVAPTGD  120
DIGETNGSHM SSSSVFPQTN KNLQISEAIQ MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL  180
QSVLEKAQET LGSQNLGTVG LEAAKVQLSE LVSKVSTHCL NSTFPGIKDV SIQTNQPTDC  240
SIDSCLTYCE GQQNEQDMMG LTLLKSKKVD NEPENVWCED TNRNKKFDLS MSVGGLKTSE  300
WNTSRSYTEE RFMDRDEEAI LMNQNNQKKT HSVKLEKVEM SQKFQLPYFG QKLDLNVHDG  360
NDAASSHKQF DLNGLSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-22	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-22	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-22	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-22	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	41	98	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023752608.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_023752613.1	0.0	myb-related protein 2-like isoform X2
Swissprot	Q9FK47	1e-120	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A2J6MIA7	0.0	A0A2J6MIA7_LACSA; Uncharacterized protein
STRING	XP_002525443.1	1e-161	(Ricinus communis)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]