PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010386
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-YA
Protein Properties Length: 246aa    MW: 27403.5 Da    PI: 8.628
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-56191PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.77e-32129185158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d p+YVNaKQy++Il+RRq Rakle+++kl  k+r+pylheSRhkhAl+R RgsgGrF
  Lsa010386 129 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKNRRPYLHESRHKHALNRVRGSGGRF 185
                57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.7E-36127188IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.806128188IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-24131153IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-27131185IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860133153IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.9E-24162185IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVPAPHLPGD PNELTQQSYN QDSSTCLSSD QSQKDDDVAT HGVHSQDQCI SSSGSDETQM  60
KPFLFMGNPS FGMTGGLQAE KTTPIVENVY ADNYFNGLYT PYGPHPIIQP HIIQIAPARV  120
PLPIDLSEDG PIYVNAKQYH GILRRRQIRA KLEAQNKLVK NRRPYLHESR HKHALNRVRG  180
SGGRFLPTKK PQQQSKPARF LTPHFPSSYQ EANQSGMEHE HYHGYSGISW GIRGNEGFLS  240
TSGGQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21129189262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756801.10.0nuclear transcription factor Y subunit A-3-like
TrEMBLA0A2J6MH930.0A0A2J6MH93_LACSA; Uncharacterized protein
STRINGPOPTR_0006s14740.15e-59(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.48e-38nuclear factor Y, subunit A8