PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010437

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

FAR1

Protein Properties

Length: 253aa MW: 29267.9 Da PI: 6.2939

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-33853	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.2	1.1e-27	88	175	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k ++gkw++tk+++eH+H l+p Lsa010437 88 FYNAYATRLGFLIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KVVRQRVETRVGCRAMVLVRKINSGKWVITKFVKEHTHLLTP 175 ****************************************9988..99**********************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-24	88	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDFEVDDDVN SEVLLNSTEI QPQKGDEDDM AMVGCSLEEV FHNNHEHDIK IDQDEPESGT 60 IPLDGSHNVI EEPYIGQEFE SEASAHAFYN AYATRLGFLI RVSKLSRSRR DGSAIGRALV 120 CNKEGFRMPD KREKVVRQRV ETRVGCRAMV LVRKINSGKW VITKFVKEHT HLLTPGKGRR 180 DLIYDQYPNE HDKIRELSQQ LAIEKRRSAA YKRHLEMVFE HIEEHNRSLS KKIQEIVNNV 240 NAMESKEFET CQK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023736576.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A118K4W6	1e-136	A0A118K4W6_CYNCS; FAR1 DNA binding domain-containing protein
STRING	XP_010097543.1	1e-123	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-102	FAR1 family protein