PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010526

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 308aa MW: 33395.1 Da PI: 8.3741

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-13562	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	45	106	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Lsa010526 45 KEAAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 106 67899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	39	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-33	48	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDTAHWPQEI AMKPMEEMVV QNATNSCSKP SSNSSSLERR ARPQKEAAIN CPRCNSTNTK 60 FCYYNNYSLS QPRYFCKTCR RYWTEGGSLR NVPVGGGSRK NKRSSSSISS HSSMSKKLPD 120 LVVPPAANPV LSQNPRMHHE HGQDLNLGFP STNDFKTISE LIQVPNFDGT KNTTSASGTT 180 TSSANLSALE LLTGMTTRGM MNSFMPIPVP DPNSVYSSSG QLMIPMPEFK IPSLSFSLDG 240 MGGNGGGGTY GSSLHDSSSG RLLFPFEDLK TSSATTTTHD GHHSVEQNRD QNGDTNGFWT 300 GMLGGGSW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745615.1	0.0	dof zinc finger protein 1
TrEMBL	A0A2J6JPW2	0.0	A0A2J6JPW2_LACSA; Uncharacterized protein
STRING	EOY23946	1e-114	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-51	Dof family protein