PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010629

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 346aa MW: 40037.7 Da PI: 6.746

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58687314	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.8	7.9e-31	63	116	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH rFv+a+e+LGG+e+AtPk +l+lm++kgL ++hvkSHLQ+YR+ Lsa010629 63 PRLRWTNDLHLRFVQAIEKLGGQERATPKLVLQLMNIKGLHIAHVKSHLQMYRS 116 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.994	59	119	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-29	59	117	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.78E-14	61	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	63	118	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	64	115	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MERSQETKCS KTSSDSYPNE EGEEESESKE VLELKDGGSS SNSTIEESDK KPSVRPYVRS 60 KMPRLRWTND LHLRFVQAIE KLGGQERATP KLVLQLMNIK GLHIAHVKSH LQMYRSKKIE 120 DPNQVANPRI EDGDRNIFNL SQLPMLQCYN RTYDSAFRYE DPPPYRRDWM HNALREHCSF 180 QKTKPRFYNI ADRILAINHV EQANRSMQSN LQPPLNEKFS WEVNDNFGSR ICEKMDMLPN 240 PNEKLNPFKI QEHQNISLDL ESTSLEKHKG TKRKASDLSL DLNLSLGVHS EKGVEEGDDD 300 GEGEERNLSL SLYSPYFSRN RKKLITEDDH SNDQKAKRAS TLDLTI

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MERSQETKCS KTSSDSYPNE EGEEESESKE VLELKDGGSS SNSTIEESDK KPSVRPYVRS  60
KMPRLRWTND LHLRFVQAIE KLGGQERATP KLVLQLMNIK GLHIAHVKSH LQMYRSKKIE  120
DPNQVANPRI EDGDRNIFNL SQLPMLQCYN RTYDSAFRYE DPPPYRRDWM HNALREHCSF  180
QKTKPRFYNI ADRILAINHV EQANRSMQSN LQPPLNEKFS WEVNDNFGSR ICEKMDMLPN  240
PNEKLNPFKI QEHQNISLDL ESTSLEKHKG TKRKASDLSL DLNLSLGVHS EKGVEEGDDD  300
GEGEERNLSL SLYSPYFSRN RKKLITEDDH SNDQKAKRAS TLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-16	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-16	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-16	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-16	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-16	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-16	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-16	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-16	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-16	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-16	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-16	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-16	64	118	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023729701.1	0.0	uncharacterized protein LOC111877407
TrEMBL	A0A2J6KPP2	0.0	A0A2J6KPP2_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-54	G2-like family protein