PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010703
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 225aa    MW: 26210.7 Da    PI: 9.0799
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691029PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-3722PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.7e-102549126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               yktelC +f+r GtC y drC+FaHg
  Lsa010703 25 YKTELCLRFQR-GTCDYADRCCFAHG 49
               9**********.*************9 PP
2zf-CCCH19.81.4e-0688108525
                --SGGGGTS.--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartG.tCkyGdrCkFaH 25 
                lC + +  G  C++Gd+C+F+H
  Lsa010703  88 LCWRVMN-GdKCQFGDKCHFNH 108
                5555666.559*********** PP
3zf-CCCH34.33.9e-11137163127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++t+lC++++ tG C+yG +C+FaHg+
  Lsa010703 137 WRTKLCNRWMSTGSCPYGFKCCFAHGE 163
                79***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-102150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-62352IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-62450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9292451IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-72549IPR000571Zinc finger, CCCH-type
SMARTSM003560.1583110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.55483111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-585112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-486112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-15131168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.77E-9135167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455136164IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5136163IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9137163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MFQNENQFPK RLRTSEPMPN RRTQYKTELC LRFQRGTCDY ADRCCFAHGY GHLSGFDKWQ  60
ELTALDGASR IKYLDENQNP KCSDRSRLCW RVMNGDKCQF GDKCHFNHIK TERESAVISV  120
LNVAGRSEMQ QQKKTPWRTK LCNRWMSTGS CPYGFKCCFA HGESELRKQR SNDVQAYAEN  180
APCDKKIDGK QREFKWKNVE KIGRVYADWI TDTPLVHVVT GNLAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760445.11e-171zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A103YBG21e-112A0A103YBG2_CYNCS; Zinc finger, CCCH-type
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-23C3H family protein