PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010736
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LBD
Protein Properties Length: 234aa    MW: 26139.4 Da    PI: 9.202
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678012PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.35.7e-3436132197
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                aCa+C+++r+kC+++C+lap fpae++++f++vhk+FG+snv+kl+k+l +e+ ++a++sl++eA++r++dPv G +g +++++++l+  k++ +++
  Lsa010736  36 ACASCRHQRKKCTEKCILAPFFPAEKTQDFQAVHKVFGVSNVTKLVKDLTREDGKKAVDSLIWEANCRLKDPVLGPLGEFQRVSEELRVYKTQYQQA 132
                7**************************************************************************************9999887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.49835136IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-3336132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MQKSHITTTT IRVLEAAPSP SPPPTTTTNG GGGVPACASC RHQRKKCTEK CILAPFFPAE  60
KTQDFQAVHK VFGVSNVTKL VKDLTREDGK KAVDSLIWEA NCRLKDPVLG PLGEFQRVSE  120
ELRVYKTQYQ QANIHHHHLR QIPITQNGVL YNNKSGQQRL IGSWNGDNNG INNGAVLDYI  180
HSNGIGNGGG IDNSRMFNYG SLQNMEKLKQ ERDQQQGSLI HPQQHMMNDF SQFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-23281404113LOB family transfactor Ramosa2.1
5ly0_B1e-23281404113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766143.11e-178LOB domain-containing protein 2
TrEMBLA0A2J6L9491e-176A0A2J6L949_LACSA; Uncharacterized protein
STRINGXP_009770460.17e-57(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-40LOB domain-containing protein 2