PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010781

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TALE

Protein Properties

Length: 610aa MW: 66953.4 Da PI: 7.3449

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58693622	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-56119	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.3e-09	377	414	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Lsa010781 377 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 414 554459******************************88 PP
2	BELL	116.8	1e-37	243	314	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+q+vis Fe++ g+gsak Yt+lAl++iS++FrcLkdai++qi Lsa010781 243 ERQEVQMKKAKLVNMLDEVEQRYRQYHNQMQIVISWFEQASGIGSAKTYTALALQTISKQFRCLKDAIMGQI 314 79********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-53	172	312	IPR006563	POX domain
Pfam	PF07526	6.2E-47	177	311	IPR006563	POX domain
PROSITE profile	PS50071	12.195	355	418	IPR001356	Homeobox domain
CDD	cd00086	1.84E-11	358	419	No hit	No description
SMART	SM00389	5.3E-9	358	422	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-17	359	424	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-29	361	424	IPR009057	Homeodomain-like
Pfam	PF05920	2.4E-18	375	414	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MASYYSGNSE IQGGDGLQTL VLMNPGYVNY SDHHQPPPQP PAGNFMFLNN HHQQPSQTQQ 60 FVGIPLSSQP SGSIHSQHDI SALHTFMPRV QYNMYSPVEL AAPPHEVARF QQGLSLTLSS 120 QQSGFGSQGT GVPTASPRGE GRVIPGGGAG GGGDGGGGGS TPSASGVSNG VNSMQSVLLN 180 SKYLKATHEL LEEVVNVGKG VFKNSDHSTK NLITTGGGGS PAQTSGDETS SKRVDGAELT 240 TAERQEVQMK KAKLVNMLDE VEQRYRQYHN QMQIVISWFE QASGIGSAKT YTALALQTIS 300 KQFRCLKDAI MGQIKTASRN LGEEDNKIEG GSRLKFVDNQ IRQQRALQQL GMIQHNAWRP 360 QRGLPERSVS VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV 420 EEMYLEETKE QEQNRLKENK GSKSEQSDEN ENSLSRQENS KSVSPENSKR NFNQPPPPSI 480 SVSPTGINFQ NQSGFSSQMD GITQFNSKKP RTNVGFMGNP TDFMGGLGGY PVGEIERFGN 540 HQFQSPYSGN AVSLTLGLPN ENISGMELAE TNEFEPMNQQ SSSHSTTIYE TINIQNQKRF 600 GAQPLPDFVT

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MASYYSGNSE IQGGDGLQTL VLMNPGYVNY SDHHQPPPQP PAGNFMFLNN HHQQPSQTQQ  60
FVGIPLSSQP SGSIHSQHDI SALHTFMPRV QYNMYSPVEL AAPPHEVARF QQGLSLTLSS  120
QQSGFGSQGT GVPTASPRGE GRVIPGGGAG GGGDGGGGGS TPSASGVSNG VNSMQSVLLN  180
SKYLKATHEL LEEVVNVGKG VFKNSDHSTK NLITTGGGGS PAQTSGDETS SKRVDGAELT  240
TAERQEVQMK KAKLVNMLDE VEQRYRQYHN QMQIVISWFE QASGIGSAKT YTALALQTIS  300
KQFRCLKDAI MGQIKTASRN LGEEDNKIEG GSRLKFVDNQ IRQQRALQQL GMIQHNAWRP  360
QRGLPERSVS VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV  420
EEMYLEETKE QEQNRLKENK GSKSEQSDEN ENSLSRQENS KSVSPENSKR NFNQPPPPSI  480
SVSPTGINFQ NQSGFSSQMD GITQFNSKKP RTNVGFMGNP TDFMGGLGGY PVGEIERFGN  540
HQFQSPYSGN AVSLTLGLPN ENISGMELAE TNEFEPMNQQ SSSHSTTIYE TINIQNQKRF  600
GAQPLPDFVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	364	422	5	63	Homeobox protein Meis2
3k2a_B	5e-16	364	422	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023750229.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_023750231.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-146	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2J6M871	0.0	A0A2J6M871_LACSA; Uncharacterized protein
STRING	EOY08486	0.0	(Theobroma cacao)
STRING	XP_009628712.1	0.0	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]