PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010911
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WOX
Protein Properties Length: 302aa    MW: 33897.5 Da    PI: 7.5184
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29950001PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-50149PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-202485257
               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               ++R+t+t++q+++L+el+++   r p+a++++++A++l    +++ ++V++WFqN++a+e++
  Lsa010911 24 STRWTPTSDQIRILKELYYNngIRSPTADQIQRIAARLrhygKIEGKNVFYWFQNHKARERQ 85
               58*****************8567*************************************97 PP
2Wus_type_Homeobox1131.5e-362387265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
          Lsa010911 23 SSTRWTPTSDQIRILKELYYnNGIRSPTADQIQRIAARLRHYGKIEGKNVFYWFQNHKARERQKK 87
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-121793IPR009057Homeodomain-like
PROSITE profilePS5007110.8192086IPR001356Homeobox domain
SMARTSM003892.2E-62290IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-82585IPR009057Homeodomain-like
PfamPF000461.4E-172585IPR001356Homeobox domain
CDDcd000867.24E-82587No hitNo description
SuperFamilySSF1014476.28E-597107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
METQQQEQDL GNKNNTSYLC RQSSTRWTPT SDQIRILKEL YYNNGIRSPT ADQIQRIAAR  60
LRHYGKIEGK NVFYWFQNHK ARERQKKRFT PVPVTPPPPP PPPPPPPSTA ILLPSPFSDH  120
RHHHHHMHVN SHHPPQFYSQ QHKLYTTHQI SPSEGGSSST GFMPVGYGYG SVAMEKSFKE  180
CSISQGESRV VGGTSQNFGS WVGSDSYSYE KIKPEYEAPE EDDDRGGELS AQMETLPLFP  240
VNGGATMGSS HHDIINMKAP VAVESPLMSE HSNGGCYTGG NWFRSDGRTS LELSLNSYGY  300
YN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749772.10.0protein WUSCHEL-like
TrEMBLA0A2J6M9940.0A0A2J6M994_LACSA; Uncharacterized protein
STRINGEMJ043771e-68(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-43WOX family protein