PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011015

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 292aa MW: 32433.1 Da PI: 6.717

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58686695	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.2e-11	175	222	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++YI+ Lq Lsa011015 175 SHSLAERARREKISERMKILQDLVPGC----NKVIGKAMVLDEIINYIQALQ 222 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-17	169	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.89E-11	169	226	No hit	No description
PROSITE profile	PS50888	15.809	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-18	171	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	175	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-11	177	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MDPPVMMNGG DFRSSNAASS FCSMTEILPY HVNFGGGVGN VASFGLGHLI GNSDDDNNSG 60 SSVDAFMKTG GHVSVDDPMD LDQRGSNFHS KKRREEDDSS KRVSINSPSN NNGNCKSDCE 120 GKRLKSMGTE YEIFEANVKA DRSSGKQTEN NMKPSEPPKQ DYIHVRARRG QATDSHSLAE 180 RARREKISER MKILQDLVPG CNKVIGKAMV LDEIINYIQA LQRQVEFLSM KLEAVTSRSH 240 PNSEQFPSKD YGCQTYDMVS MPFVSQPTRE FSRGSSPEWL HMQIGGNFER TT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023772447.1	0.0	transcription factor BHLH094-like
Swissprot	Q69WS3	3e-75	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A2J6KUS9	0.0	A0A2J6KUS9_LACSA; Uncharacterized protein
STRING	XP_010098235.1	1e-100	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	4e-77	BIG PETAL P