PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011042
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 504aa    MW: 55613.8 Da    PI: 6.7404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689970PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-053153123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r+H
  Lsa011042 31 FVCQYCHKGFQREQNLTLHKRVH 53
               89*******************99 PP
2zf-C2H214.88.2e-05109131123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++   s+L+ H++++
  Lsa011042 109 HKCDNCSKTYAVESDLRAHLKNC 131
                79******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.23E-52754No hitNo description
Gene3DG3DSA:3.30.160.601.2E-53054IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4893153IPR007087Zinc finger, C2H2
PfamPF139128.3E-53153IPR007087Zinc finger, C2H2
SMARTSM003550.0133153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
SMARTSM003556373103IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-695129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.48E-597130No hitNo description
PROSITE profilePS501578.725109136IPR007087Zinc finger, C2H2
SMARTSM0035534109129IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
XDQLTYAKIN LLTYIEVVEV SAATLLDANR FVCQYCHKGF QREQNLTLHK RVHNLPFHLK  60
TRGAKDAMPR KVYICPEVTC INHQPSHALG DFGGLKKHYL RKHSNDKKHK CDNCSKTYAV  120
ESDLRAHLKN CSTKRYICQC GARFSSSHRF GHHQDYCDAQ VLEDASIYGN NNTTNSISST  180
TSYLPSSYMG DNSIGSTTNI NNNSLIGSTT SYLPISAMGS NNNINNLIDS TMSHLQTFNS  240
HIGFTTPHLG PQISSSQNQT SQSRLSPIIT EHGSLTNDPS WGLNMARIPY NISSLSSTPQ  300
NQHEFQEKTG MGYYTNLMNI DYSNVNHENT SFMGDVSHYG SVEGSNLYSG PGSSSSEFQG  360
FNMLPFGTPN LVANMDLYGS ASGNSNASNM VQPYAMSSSS YGGYIIPQEH NSLFDNQHFG  420
IAENSGFHDI MNTLHNPVTG RGVEFSTINE NVGSSYNQGN YSGYVDGSGY INYGAEREVW  480
NSGTLGAVAP ADENQYWNQH GFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-14106172472Zinc finger protein JACKDAW
5b3h_F7e-14106172472Zinc finger protein JACKDAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760561.10.0protein indeterminate-domain 6, chloroplastic-like
TrEMBLA0A2J6LKR70.0A0A2J6LKR7_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.15e-54indeterminate(ID)-domain 7