PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011097
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 582aa    MW: 66561.9 Da    PI: 5.3976
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695450PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-38152PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00086553572221
                EETTTTEEESSHHHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                +C  Cg+ F ++  L++H++
  Lsa011097 553 TCDTCGEDFESRNKLHKHLS 572
                8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1104.8E-2431112IPR001623DnaJ domain
SuperFamilySSF465653.53E-2334133IPR001623DnaJ domain
SMARTSM002713.8E-213799IPR001623DnaJ domain
PROSITE profilePS5007618.83638107IPR001623DnaJ domain
CDDcd062574.33E-173896IPR001623DnaJ domain
PfamPF002264.9E-2139104IPR001623DnaJ domain
PRINTSPR006252.2E-144058IPR001623DnaJ domain
PRINTSPR006252.2E-145873IPR001623DnaJ domain
PRINTSPR006252.2E-147999IPR001623DnaJ domain
PROSITE patternPS00636084103IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.29E-12312363No hitNo description
SMARTSM004510.0093320354IPR003604Zinc finger, U1-type
PfamPF121711.9E-10323348IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003555323347IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767323352IPR007087Zinc finger, C2H2
PROSITE patternPS000280325347IPR007087Zinc finger, C2H2
SMARTSM003551.4552576IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93552581IPR007087Zinc finger, C2H2
PROSITE patternPS000280554576IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
RGAALATGCR SCLTEYQNSL KPSETQRSES MDSSEKRCLY EVLGVHRDCT ADEIRSAYRK  60
LALQRHPDKL VKSGVSEAEA TASFQELVNA YEVLSDAKER AWYDSHRSQI LFSSSNSNNS  120
SPAIVPDLFG FFSNSVFSGY SDKGTGFYKV YSDVFDKIYR NELNFAKKLG LGDVVKEAPL  180
MGNLDSPYAQ VNAFYGYWLG FVTVMDFVWA DQYDAMAGPN RKXQEVDGRG EQEDPGRKAR  240
REFNDTVRGL AEFVKKRDKR VIDMQVKRNE EIERKKEEER LKKKEMEREK AERARAYEEP  300
EWAKVEDDEI SEYEEEIEKK NELYCVACGK KFKSDKQWKN HERSKKHKEK IAALREVFGD  360
EDRENKYTEE VASDKDEFAS ADEVHEEVDN LKNPFAGGYE NKDYDQESEL TEDEENVDVD  420
NGGKGRKPVA PFKKAYIEVE DEEVDLMEYN NNKKSRRKKG NQKEKNRTAE EEEEEKHQNN  480
GNDDHDQPSS SSQLHSENVD KDDKGDNVPS QSINVSKQAP TKKVANKKET APKSKNASKG  540
RKQKGTSKSS SLTCDTCGED FESRNKLHKH LSDSGHATLK SR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759864.10.0DNAJ protein JJJ1 homolog isoform X2
TrEMBLA0A2J6LMF20.0A0A2J6LMF2_LACSA; Uncharacterized protein
STRINGXP_009595027.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-125DNAJ heat shock N-terminal domain-containing protein