PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011124
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 353aa    MW: 39348 Da    PI: 7.8687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-56345PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-06143164223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C+ Cgk F+r  nL+ H+r H
  Lsa011124 143 FCELCGKGFKRDANLRMHMRAH 164
                6*******************99 PP
2zf-C2H211.90.00069265281521
                TTTEEESSHHHHHHHHH CS
    zf-C2H2   5 dCgksFsrksnLkrHir 21 
                 Cg+sFsrk+ L  H+ 
  Lsa011124 265 SCGTSFSRKDKLFGHMA 281
                5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.64E-6139165No hitNo description
Gene3DG3DSA:3.30.160.602.5E-5141164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003142164IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905142169IPR007087Zinc finger, C2H2
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
SMARTSM0035589196229IPR015880Zinc finger, C2H2-like
SMARTSM0035545234256IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-4256281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210262286IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDTDGRHQQL INLSKLQSRM DHVQRFLSDS LNTNTIIGES QMEIVSKEIT SAINQVIVNG  60
AALLSCTGLP KSKSETPNLS VRTTSLTFDS KHSPESDLIL NQLKHDVDLG VPKTEVFGEE  120
IRDDDWDIVE LDAVELLAEH LHFCELCGKG FKRDANLRMH MRAHGNKFKT LEALSKPEKS  180
GLSSSSELTR GGRTRFSCPF AGCTRNKLHK KFRPLKSVIC VKNHFKRSHC PKMYSCNRCH  240
KKNFSVLADL KSHLKHCGET KWKCSCGTSF SRKDKLFGHM ALFEGHMPAM PEEVVVEEDE  300
KAKGVAVTPA PAPALAAVVV EDAEGGDACK VAKGMDWIDN TMDDGFFRWI GFT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752559.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A2J6M3B10.0A0A2J6M3B1_LACSA; Uncharacterized protein
STRINGcassava4.1_009526m1e-127(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.27e-73C2H2 family protein