PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011185
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CO-like
Protein Properties Length: 413aa    MW: 46669.4 Da    PI: 4.7084
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-15621PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.43.3e-091660341
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
               +r C+ + +k+++++C  ++ +lC++C  + H+       H++v 
  Lsa011185 16 ARACDSCVRKRARWYCAADDAFLCQSCDASVHSAnqlagrHERVL 60
               578*****************************6688888898875 PP
2CCT68.71.5e-23367410144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Lsa011185 367 REARVSRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRE 410
                9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.681461IPR000315B-box-type zinc finger
PfamPF006436.5E-81660IPR000315B-box-type zinc finger
CDDcd000218.66E-111761No hitNo description
PROSITE profilePS5101715.934367409IPR010402CCT domain
PfamPF062033.4E-18367409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MIAGKKTANA VGGKTARACD SCVRKRARWY CAADDAFLCQ SCDASVHSAN QLAGRHERVL  60
LETASSKLFG SGIASPEPTW HQGLTRRART PRLRTKSSLK LDRKSDLVNS SAPLVPEIGV  120
LDPSSLDEEE EEEELLYRVP VFDPFETELF NTSDEIGRSL TFVVENKQEE TCDLDDLQGF  180
DLPTDDMELL EFAADVESLL GKGYDDTSCR IEELGLTNYD FKDEDNTNII IGTCFDENKV  240
KVEDDEREAI LGFDLDTTRE TLDWDFGHES TMMIKEEEKK VVVGVKEHMI MVSNDECKEA  300
MVRKSSITLR LNYDEVISAW ADQGSPWTNG TRPELNLDGC WPDFMGLQWM GNNTPLCGGL  360
GGSDGGREAR VSRYKEKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRE GNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377393RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759802.10.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD01e-102COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2J6LN160.0A0A2J6LN16_LACSA; Uncharacterized protein
STRINGcassava4.1_007940m1e-126(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-87B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]