PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011256
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 352aa    MW: 39294 Da    PI: 6.9651
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682043PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
        Lsa011256 14 KGPWAPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.89.3e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        Lsa011256  69 GGFSEEEDRIICSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.287962IPR017930Myb domain
SuperFamilySSF466894.9E-2611109IPR009057Homeodomain-like
SMARTSM007179.7E-121364IPR001005SANT/Myb domain
PfamPF002491.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-241569IPR009057Homeodomain-like
CDDcd001678.74E-91662No hitNo description
PROSITE profilePS5129421.60963117IPR017930Myb domain
SMARTSM007175.7E-1167115IPR001005SANT/Myb domain
PfamPF002492.0E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2370117IPR009057Homeodomain-like
CDDcd001676.41E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRAPCCDKD NVKKGPWAPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKQLLGK  120
QRKEQIYRRK GELLIKKGRS PSHIPSSIVV RSNDTNNSQD PYWPELPVMP PVPYSNQEPC  180
FVDDHASIRK LLIKLGGRFS SDDNGSQSTN MVSDFPIDTS TDLQTSSQDN QNLIASGSPV  240
SSSSMLLNSQ YNILPILQGQ NVSFPSVFED MCYTTNPQKL NGLEFLYGEL CDLNASGSSS  300
VVTSGHSMDW GEMSSLISGT TTGNVLNSCD YQRSLIRQGV LLQDCSYDED FX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765199.10.0transcription factor RAX3-like
TrEMBLA0A2J6LAQ30.0A0A2J6LAQ3_LACSA; Uncharacterized protein
STRINGPOPTR_0002s11440.11e-128(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-74myb domain protein 84