PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011281

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 400aa MW: 45041.1 Da PI: 6.8907

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58684863	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.1e-16	90	135	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Lsa011281 90 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 135 899***************************.*********996 PP
2	Myb_DNA-binding	56.2	8.1e-18	142	185	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T eE+e+l a++++G++ W++Iar ++ gRt++ +k++w+ Lsa011281 142 RKAFTDEEEERLMTAHRMYGNK-WALIARLFP-GRTDNAVKNHWHV 185 789*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.04	85	136	IPR017930	Myb domain
SMART	SM00717	2.2E-14	89	138	IPR001005	SANT/Myb domain
Pfam	PF00249	7.5E-16	90	135	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-27	90	183	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-26	91	143	IPR009057	Homeodomain-like
CDD	cd00167	2.29E-13	93	134	No hit	No description
PROSITE profile	PS51294	26.011	137	191	IPR017930	Myb domain
SMART	SM00717	1.1E-14	141	189	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-15	142	184	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-20	144	190	IPR009057	Homeodomain-like
CDD	cd00167	1.75E-11	144	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MIFSDSFRSL SLNNQNPNSN PNHHLIRSSS SSSSSSLDFP LMITTTSSHN QEDDEDEEEQ 60 EELDLNLSSG AGCTFNNGKM MIKPTKTCAR GHWRPAEDAK LKELVALYGP QNWNLIAEKL 120 EGRSGKSCRL RWFNQLDPRI NRKAFTDEEE ERLMTAHRMY GNKWALIARL FPGRTDNAVK 180 NHWHVIMARK YREQSNAHRK RRMFITQTVS GSDTPSATPP PPPPPQILIP TDAPPAYNGM 240 FHQQPPLGFI SGGKNNNQMM MMMMDHILSS KNKCWDTLSS SSPSSNTSWM MGNSTSTTNN 300 FYDHQHQYHH DDDRHSDQNE HALPLMMMTA GINHQYYHHH QGYNSSSSPF SSVADNSAIG 360 TTHSVTTVTP PPQVLQSQQF SEANIDISPP LIDFLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MIFSDSFRSL SLNNQNPNSN PNHHLIRSSS SSSSSSLDFP LMITTTSSHN QEDDEDEEEQ  60
EELDLNLSSG AGCTFNNGKM MIKPTKTCAR GHWRPAEDAK LKELVALYGP QNWNLIAEKL  120
EGRSGKSCRL RWFNQLDPRI NRKAFTDEEE ERLMTAHRMY GNKWALIARL FPGRTDNAVK  180
NHWHVIMARK YREQSNAHRK RRMFITQTVS GSDTPSATPP PPPPPQILIP TDAPPAYNGM  240
FHQQPPLGFI SGGKNNNQMM MMMMDHILSS KNKCWDTLSS SSPSSNTSWM MGNSTSTTNN  300
FYDHQHQYHH DDDRHSDQNE HALPLMMMTA GINHQYYHHH QGYNSSSSPF SSVADNSAIG  360
TTHSVTTVTP PPQVLQSQQF SEANIDISPP LIDFLGVGAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-32	90	190	7	107	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023754784.1	0.0	transcription factor CSA-like
TrEMBL	A0A2J6MHN6	0.0	A0A2J6MHN6_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	1e-72	myb domain protein 105