PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011297

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 298aa MW: 31897.1 Da PI: 10.4771

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58689473	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-42611	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.7	3.1e-36	52	123	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++++++++++hTkv+gR+RR+R++a+ca r+F+L++eLG+++d++ti+WLlq a+p+i+++tgt++++a ++ Lsa011297 52 PPRRSSTKDRHTKVEGRGRRIRMPATCATRIFQLTKELGHKSDGETIQWLLQHAEPSIIAATGTGTIPAIAM 123 7899************************************************************99998444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-30	57	146	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.77	58	112	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MNSPSPPSAA HQPPSPPNPP QTAASSHGLS LIPLKKEPLL EEKVFTTPPP PPPRRSSTKD 60 RHTKVEGRGR RIRMPATCAT RIFQLTKELG HKSDGETIQW LLQHAEPSII AATGTGTIPA 120 IAMSVNGTLK IPTSISTVTV TATAAAVATT TTSIPKKRKL PSDFDINRNE NTPTTVTTSV 180 LAPLMTTTAQ PQSFIPIWAI PYNGTAAFWA FQPSTTPFLN NSATPISFIT SGDQKPTPIN 240 TANYTTITTT STSISTSTSA SATTTPTKAQ SFTDFPMNLH ERKEFSFIQV NHGTPSEQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023764346.1	0.0	transcription factor TCP9-like
Swissprot	O64647	1e-52	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2J6LCJ8	0.0	A0A2J6LCJ8_LACSA; Uncharacterized protein
STRING	VIT_15s0048g01150.t01	4e-63	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-37	TCP family protein