PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011356
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 184aa    MW: 20548.1 Da    PI: 7.8653
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58664678PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543.1e-1735122292
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                fk     + + ++++++p +f+ +  g++++ + +t++++ g++W++ ++  +k   ry+l++ W++F + n+L egD +vFk+++++++ l
  Lsa011356  35 FKMI--ISQGHKCCMRVPSEFV-RLAGIEAGRRSITMRNPAGKEWQMSFRSeSKVCTRYYLSSVWSDFWRLNNLSEGDECVFKFIKNEDK-L 122
                5555..67788899********.6666778889****************775666666**************************997655.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.75832130IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-1633124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1533120IPR015300DNA-binding pseudobarrel domain
CDDcd100176.77E-1633122No hitNo description
SMARTSM010191.5E-934130IPR003340B3 DNA binding domain
PfamPF023629.6E-1635124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
XGDHGVGRDG DKEDDEDDCG EIGGDDDDGV GDPFFKMIIS QGHKCCMRVP SEFVRLAGIE  60
AGRRSITMRN PAGKEWQMSF RSESKVCTRY YLSSVWSDFW RLNNLSEGDE CVFKFIKNED  120
KLLLETITKK HPAGKVQAAE VPPTVVLKRP VGRPPRVEVE KEVRAKKPAG KVQAAEVRKP  180
VGRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023761309.11e-109B3 domain-containing protein REM9-like
TrEMBLA0A2J6JME61e-27A0A2J6JME6_LACSA; Uncharacterized protein
TrEMBLA0A2J6JMF11e-27A0A2J6JMF1_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.18e-09B3 family protein