PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011362
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LBD
Protein Properties Length: 208aa    MW: 22544.5 Da    PI: 7.6667
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677225PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-49456PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.82.3e-302104198
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C+l+  +     p++q++++ +v+k+FG++ ++++l+++ e++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++
  Lsa011362   2 SCNGCRVLRKGCNDNCILRHSLhgictPQAQANATVFVAKFFGRAGLMSFLSSVAESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQSAVETV 101
                6************************99*********************************************************************9998 PP

     DUF260  96 llk 98 
                l++
  Lsa011362 102 LRG 104
                765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.1351107IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSCNGCRVLR KGCNDNCILR HSLHGICTPQ AQANATVFVA KFFGRAGLMS FLSSVAESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQSAVET VLRGGSIRSM PELFSVGSTP  120
VMTENDDASE AINCNFDVSR VRPEDLNLGV GGLDDNMRLR NSGSGRNTHR WMTEKRRAVS  180
PSDASETTTL ESGLGSDCSE TKLLRLFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739022.11e-152LOB domain-containing protein 38-like
SwissprotQ9SN238e-62LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2J6K3Y61e-151A0A2J6K3Y6_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000661652e-79(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-64LOB domain-containing protein 38