PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011382

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Protein Properties

Length: 138aa MW: 15408.7 Da PI: 4.2539

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58668791	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.3	2.8e-13	9	96	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+l d ++ + + +p +f+++h+++k + ++++ +g sW+vk+ ++ +g + +++GW++ v + +L Df+vF+l+++s+f+l Lsa011382 9 FLKIL--QDPSAASYIAIPPDFVRDHMENK-IPESSIIRSVTGeHSWSVKI--KNIDGIHCFADGWNNVVADSQLGLWDFLVFSLVDESTFTL 96 66777..4444455589*******5443.44455667765559**..******************************99999966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-15	6	104	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.21E-12	7	99	No hit	No description
SuperFamily	SSF101936	3.34E-16	7	109	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.532	7	102	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-9	9	102	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-10	9	97	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MATRYQPSFL KILQDPSAAS YIAIPPDFVR DHMENKIPES SIIRSVTGEH SWSVKIKNID 60 GIHCFADGWN NVVADSQLGL WDFLVFSLVD ESTFTLTSFG PNGCEKKFPS EIPEKNGKEE 120 EEEEEDNNNN NGAGDHGX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023761309.1	1e-96	B3 domain-containing protein REM9-like
TrEMBL	A0A2J6JME6	1e-31	A0A2J6JME6_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	8e-11	B3 family protein