PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011539
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 288aa    MW: 32653.5 Da    PI: 7.7559
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58680202PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-38057PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l+d++++ G+g +W + +++ g++R++k+c++rw++yl
        Lsa011539 14 KGPWSPQEDTKLKDYIHKNGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding37.74.9e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  Ed l++ ++   G++ W+ Ia+ ++ gRt++++k++w++
        Lsa011539  69 GEFSDHEDRLIYTLFSSIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.723962IPR017930Myb domain
SuperFamilySSF466891.45E-2512109IPR009057Homeodomain-like
SMARTSM007174.3E-111364IPR001005SANT/Myb domain
PfamPF002498.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-221569IPR009057Homeodomain-like
CDDcd001679.16E-81662No hitNo description
PROSITE profilePS5129420.38963117IPR017930Myb domain
SMARTSM007177.5E-1267115IPR001005SANT/Myb domain
PfamPF002491.5E-1069111IPR001005SANT/Myb domain
CDDcd001672.63E-870113No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRAPCCDKS KVKKGPWSPQ EDTKLKDYIH KNGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPDIKHGE FSDHEDRLIY TLFSSIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKIMNF  120
ISTNHQTEKP LHHLEFVNCP SSNYSYPTSS SVTTVDNHPV LPSDDHGYIN VDMETYRVKD  180
NSTLFMLEGD AQAADCSSNS DGRWHHVYGS GAFDARNNMG GLKTSNSYMG VDGNYCEKAR  240
GCYGDSTMEF SLEEFKKLIS TNLCNSNTNN NLNVFVDELK AEENIMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744884.10.0transcription factor RAX2-like
TrEMBLA0A2J6JRH10.0A0A2J6JRH1_LACSA; Uncharacterized protein
STRINGcassava4.1_012036m3e-88(Manihot esculenta)