PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011563
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 292aa    MW: 31866.3 Da    PI: 8.2979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683962PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05230252223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp C++ Fsr  +L  H ++ H
  Lsa011563 230 VCPVCNMKFSRVGDLIDHVQKvH 252
                6******************9988 PP
2zf-C2H216.91.8e-05264286223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+C+k F+++  L+ H  + H
  Lsa011563 264 VCPKCSKGFRDPVALVEHVEReH 286
                7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.71E-11559No hitNo description
PROSITE profilePS510398.1721059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.6E-101153IPR000058Zinc finger, AN1-type
SMARTSM001540.00181352IPR000058Zinc finger, AN1-type
PfamPF014283.0E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.3E-1191144IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.54E-993144No hitNo description
PROSITE profilePS510397.90198145IPR000058Zinc finger, AN1-type
SMARTSM001540.073101142IPR000058Zinc finger, AN1-type
PfamPF014289.3E-8101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.746229257IPR007087Zinc finger, C2H2
SMARTSM003550.0078229252IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.2E-5230282No hitNo description
PROSITE patternPS000280231252IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-4231253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.078263291IPR007087Zinc finger, C2H2
SMARTSM003553.6263286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGTPAIPNLG EQCSVNDCKL IDFLPFTCDC CNKVFCLEHR SYSTHECPNA NKNDITVVIC  60
PLCAKGVHLV PNQDPNITWE SHVNTDCDPS NYEKATKKKK CPVRGCKEIL TFSNTIKCRD  120
CTIDHCLKHR FGPDHTCPGP KKPEPTFPFW GYGNPDRKKQ NPPPKQATHG SGSGSGSKWA  180
NGFLKAASSV KASAGAGIVK WGNDIGQVFQ GGKDGEGGSS GGDRVGQMEV CPVCNMKFSR  240
VGDLIDHVQK VHEKKEVMKV TLDVCPKCSK GFRDPVALVE HVEREHRGTS KA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731607.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-115SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2J6KKA40.0A0A2J6KKA4_LACSA; Uncharacterized protein
STRINGXP_010102532.11e-137(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]