PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011628

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 515aa MW: 58449.4 Da PI: 7.8275

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58692781	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.6	1.4e-17	121	211	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf.erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt++e laLi+a+re++ +lrrg l+ ++W++v++ + + +++ qC++k+e+l++ry+++k+++ + + st+ yf+ ++ Lsa011628 121 CWTQDEALALIQAYRERWYALRRGYLRTADWDAVAEEVgricPGA-VpPKTSAQCRHKMEKLRQRYRAEKQRALSFpGGQFLSTWFYFEAMD 211 8***********************************7763333.3489********************99985577889999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51029	8.872	110	218	IPR006578	MADF domain
Pfam	PF13837	1.5E-17	120	213	No hit	No description
PROSITE profile	PS50090	6.632	122	182	IPR017877	Myb-like domain
SMART	SM00595	9.1E-12	129	218	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MSWWWGTTGW WRWRSWCSAL VGGAHHIHPR ILASPSPYRH PHHHRPPTPP GGPFLLPPNP 60 LTFPSFKPPR NSSASSTXTI ITSRHSSNDL SIVVLPLDLD SATATAVSAA EKPVRRFPPP 120 CWTQDEALAL IQAYRERWYA LRRGYLRTAD WDAVAEEVGR ICPGAVPPKT SAQCRHKMEK 180 LRQRYRAEKQ RALSFPGGQF LSTWFYFEAM DSMEKNGSGS NADEETQSGN DLNSSGMKNV 240 NSKNNHQSNA ITVSNYGGLH PGRGIRFKPV AADSNLVTIA SRSNNFRVSH NYAAQEEDND 300 NDDEVEDEYF IEPPIGKNSG KTHKPSSQNY ATRFQSDHHN NNGAHVHPSK FQVTEHSGIR 360 PRKFSKTASN SNPSYWNENG EEDDDNDDGE EEEVWVKMGK DRSSASMEYR DNKYGDRNRN 420 MNSSHHYFNG EDDFSREKKG VKRDNNNSLG EIVSSIKVLA DGFVKMEKMK MDMVHEIEKT 480 RMEAEMKRNE LLLESQKQIV EAFVKGLADN RKQQQ

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MSWWWGTTGW WRWRSWCSAL VGGAHHIHPR ILASPSPYRH PHHHRPPTPP GGPFLLPPNP  60
LTFPSFKPPR NSSASSTXTI ITSRHSSNDL SIVVLPLDLD SATATAVSAA EKPVRRFPPP  120
CWTQDEALAL IQAYRERWYA LRRGYLRTAD WDAVAEEVGR ICPGAVPPKT SAQCRHKMEK  180
LRQRYRAEKQ RALSFPGGQF LSTWFYFEAM DSMEKNGSGS NADEETQSGN DLNSSGMKNV  240
NSKNNHQSNA ITVSNYGGLH PGRGIRFKPV AADSNLVTIA SRSNNFRVSH NYAAQEEDND  300
NDDEVEDEYF IEPPIGKNSG KTHKPSSQNY ATRFQSDHHN NNGAHVHPSK FQVTEHSGIR  360
PRKFSKTASN SNPSYWNENG EEDDDNDDGE EEEVWVKMGK DRSSASMEYR DNKYGDRNRN  420
MNSSHHYFNG EDDFSREKKG VKRDNNNSLG EIVSSIKVLA DGFVKMEKMK MDMVHEIEKT  480
RMEAEMKRNE LLLESQKQIV EAFVKGLADN RKQQQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758932.1	0.0	uncharacterized protein DDB_G0283697
TrEMBL	A0A2J6LPA9	0.0	A0A2J6LPA9_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-38	Trihelix family protein