PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011674
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 528aa    MW: 59197.1 Da    PI: 5.7553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683783PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-38221PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-49241502128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                ppG+r hPtdeel+ +yLkkk+ g++l+l ++i e+d++k+eP++Lp  +k k+++++w+fF++rdkky++g r+nr tk+gyWkatgkd+ +++  +++
  Lsa011674  24 PPGLRLHPTDEELILYYLKKKTCGRSLKL-DIIGEIDVCKWEPEELPgkAKWKTGDRQWFFFTHRDKKYSNGGRSNRGTKHGYWKATGKDRLIKH-YSRT 121
                9****************************.99**************96448888999*************************************9.999* PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy+grap+g++tdWvmhey++
  Lsa011674 122 VGIKKTLVFYEGRAPSGKRTDWVMHEYSM 150
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-5716173IPR003441NAC domain
PROSITE profilePS5100554.18323173IPR003441NAC domain
PfamPF023653.6E-2424149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MDSESIAAVT VSKSSSSSGE KCFPPGLRLH PTDEELILYY LKKKTCGRSL KLDIIGEIDV  60
CKWEPEELPG KAKWKTGDRQ WFFFTHRDKK YSNGGRSNRG TKHGYWKATG KDRLIKHYSR  120
TVGIKKTLVF YEGRAPSGKR TDWVMHEYSM EEEELKRCKN VQEHYTLCKV FKKSGPGPKN  180
GEQYGAPFVE EEWSDDDNCL DVESLLVKNI NNTSVNQPKL TSEPEIVEPL AQSHPVNSAN  240
NPSHVQLEVH PGSDLTQSAK EPSVITCVEE VPLLLPLPQP LVINEDFLEL DDLQGPQPSF  300
QSSMFDDFQF GGVDEFCALE FYNNATQFNE VNPFKSQPFY TSNLDFGIEN SGLHSYSNDY  360
NSSLWTHNQE TEDSTDVTIF APSGINDKSG IPDSGVNQNQ KTGEDDGGTD SWFSSAISLA  420
LALALALESK ALTNKAFDLI PSFGRISNAD GAVTHVTRRV KRSLRPKGIC LFFCSWSVVC  480
YIMCIFRDIY RVTSKMHIVK HSYGLDEGGE SEKGVILKHG VKYVNVNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-44131505140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024970620.10.0NAC domain-containing protein 17-like
TrEMBLA0A2J6KY360.0A0A2J6KY36_LACSA; Uncharacterized protein