PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011677
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 246aa    MW: 28674 Da    PI: 9.1953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58676063PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-35374PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS223.21.3e-681244132374
       GRAS 132 LasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                L+ Rp+gpp l+iTg++ p++g    e++ etg+rLakf+++++vpfef+  +ak+++++++e+L+++++  ++Vn+v +l ++lde+v  +s+rd+vL+
  Lsa011677   1 LSMRPGGPPVLQITGIDLPQPGfrPGERVAETGRRLAKFCKRFNVPFEFHG-IAKKWDEIRIEDLKIDRNVLTVVNSVNRLRNILDETVVESSPRDAVLR 99 
                789******************9*9***************************.7*********************************************** PP

       GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                l+++++P+++v+   +  hn++ +l+rf eal ++s+lfd+++++  r s +r  +E+e+ gre++nvvaceg+ r+er et+++W++r  +aGF++v l
  Lsa011677 100 LIREINPDMFVLGILNGTHNAPFLLNRFREALFHFSTLFDMFDQTSDRVSVDRLCYEQEVYGREVMNVVACEGTTRVERPETYKQWQSRNVRAGFRQVGL 199
                *********************************************9****************************************************** PP

       GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + ++++k+ +r  + + + v+e+ +++++gWk+r L+++S W+
  Lsa011677 200 FREKVEEVKSKVRLEYHKDFLVDEDGKWMLQGWKGRVLYACSLWK 244
                ****************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.5E-661244IPR005202Transcription factor GRAS
PROSITE profilePS5098538.3851224IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
LSMRPGGPPV LQITGIDLPQ PGFRPGERVA ETGRRLAKFC KRFNVPFEFH GIAKKWDEIR  60
IEDLKIDRNV LTVVNSVNRL RNILDETVVE SSPRDAVLRL IREINPDMFV LGILNGTHNA  120
PFLLNRFREA LFHFSTLFDM FDQTSDRVSV DRLCYEQEVY GREVMNVVAC EGTTRVERPE  180
TYKQWQSRNV RAGFRQVGLF REKVEEVKSK VRLEYHKDFL VDEDGKWMLQ GWKGRVLYAC  240
SLWKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-211245150380Protein SCARECROW
5b3h_A1e-211245149379Protein SCARECROW
5b3h_D1e-211245149379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753844.10.0scarecrow-like protein 14
SwissprotQ9XE581e-104SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2J6M0E31e-180A0A2J6M0E3_LACSA; Uncharacterized protein
STRINGVIT_06s0004g04980.t011e-118(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-107SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]