PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011699
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 391aa    MW: 46144 Da    PI: 9.0386
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688648PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-22437PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-11183225146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+WT+eE e l +  k++G++ Wk++a+++g  + + ++k++w+ 
        Lsa011699 183 KGKWTKEETEFLRKSYKKHGSD-WKKVAEELG--KNRIHVKDKWRR 225
                      79********************.********9..78999*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-4103173IPR009057Homeodomain-like
SMARTSM007171.8107180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-9180226IPR009057Homeodomain-like
SMARTSM007171.4E-8182229IPR001005SANT/Myb domain
SuperFamilySSF466897.43E-10183240IPR009057Homeodomain-like
PROSITE profilePS5129412.596183231IPR017930Myb domain
CDDcd001671.75E-5185227No hitNo description
PfamPF139215.4E-12186244No hitNo description
PROSITE profilePS500907.178228297IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-7231301IPR009057Homeodomain-like
SMARTSM007172.3232299IPR001005SANT/Myb domain
SuperFamilySSF466891.84E-7277357IPR009057Homeodomain-like
PROSITE profilePS500907.468299352IPR017877Myb-like domain
SMARTSM0071713303354IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDKSERKDDV EPLEIEKETN EARHEKGDMG IESLNEKGNM GNDSNSRKKD KKKKRKKDST  60
EDDPESRKDK KKKHKSKKVT FSDKVDVFPN SDKDKENTNA KTDNLLRGKW FTPEEDKILK  120
ESVLDYIKSH DLGGEEEGLK KILNCRSHPG LKNCWKQIGA RIPYRPHSAI YYRAHILFEQ  180
GEKGKWTKEE TEFLRKSYKK HGSDWKKVAE ELGKNRIHVK DKWRRIKFDN KKGGRWSQEE  240
YQGLYDLVNL DLQMKVVLEE KKSKHGMLRD NIPWTAISEK LSTRNDSTCC KKWYSQLTSS  300
LVEEGKWSNV DDYRLIRALY DLDASCVEDV EWDRVLEHRS GDVCRKRWEQ MVRHIGHHGS  360
KPFSEQVEIL SQRYCPDLEE VREDWDNKPS V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14755KKDKKKKRK
25055KKKKRK
35056KKKKRKK
45256KKRKK
55472RKKDSTEDDPESRKDKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760279.10.0cyclin-D-binding Myb-like transcription factor 1
RefseqXP_023760280.10.0cyclin-D-binding Myb-like transcription factor 1
RefseqXP_023760281.10.0cyclin-D-binding Myb-like transcription factor 1
RefseqXP_023760282.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A251TNZ91e-177A0A251TNZ9_HELAN; Putative homeodomain-like, Myb-like domain protein
STRINGPOPTR_0015s10710.11e-142(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-110MYB_related family protein