PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011726

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 240aa MW: 26720.2 Da PI: 8.9187

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58681310	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.3e-38	32	91	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+al+cprC+stntkfCyynnysl+qPryfCk+C+ryWtkGG+lr vPvGgg+rknk+s Lsa011726 32 HEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCKRYWTKGGSLRSVPVGGGSRKNKRS 91 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-28	26	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.789	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDAAQWPKDG TSNGSYNNNN NQVEDKKVKP QHEQALNCPR CNSTNTKFCY YNNYSLTQPR 60 YFCKSCKRYW TKGGSLRSVP VGGGSRKNKR SMPQPIDLSH FSSQNFTTHE PTQQQQQQYH 120 LGFSQFLKLP KIENGNANFL SSSDADGLNS FSTRGTTSWD LMLNGTRFGL QDAKPTLGFP 180 FQGDGSFQVE GTESERIMLP FGVLNQHHSS RESGQSMGQG NSSGYWNGSF GGGDSSTLYN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023746488.1	1e-179	dof zinc finger protein DOF2.5-like
TrEMBL	A0A2J6JN85	1e-178	A0A2J6JN85_LACSA; Uncharacterized protein
STRING	POPTR_0003s14450.1	3e-55	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-37	Dof family protein