PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011769

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 564aa MW: 62894.4 Da PI: 6.1874

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58691251	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-5920	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.2	1.2e-19	300	384	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ Li+a++e++ +l++g lk+ +Weev++ + ++ g+ ++++kqC++k+e+l+kry++++ +++ + + +f+ ++ Lsa011769 300 WTHQETANLIQAYQEKWYSLKKGPLKASQWEEVAITVaARCGYdepTKTAKQCRHKIEKLRKRYRAERGKPRSK----ATAWNFFKLMD 384 *********************************9965667755579***************9999985....457***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.597	299	360	IPR017877	Myb-like domain
Pfam	PF13837	3.8E-19	299	386	No hit	No description
SMART	SM00595	1.5E-6	307	391	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
XKEAHFRTTE SPITILSRFL LAVTTTPHLQ PSPTTVATTA AYHTPPQFTE IXPSESPDFD 60 QLHLMATDTP SPPPTASHEE EEDNINQQPP TQQELVLSPP SPIEDVDQHQ QFENSNSPYS 120 PRTSVTKSEK PIDREHPPPE DVADEQEPVP TSPPPQDKML GLQQPSPPPS PSSFLQPSPP 180 PPPPPPPLPT EPEYPPENLS PGHESPISKK SPSSPKRDEH PLQSPNYRET PYPNPNPNSD 240 HESPSPSSPA TLQGNPSPKP HKSPKDPSPS PPPTAASPSS PPLLQAVASS SPTKQQILPW 300 THQETANLIQ AYQEKWYSLK KGPLKASQWE EVAITVAARC GYDEPTKTAK QCRHKIEKLR 360 KRYRAERGKP RSKATAWNFF KLMDNLEKGP LPISSSLPSM ELVEYQKPSN SNGKKRKNND 420 DGDSEFLVNK RSRSKISSNH HISNGSDARF SDGGHDRVMR GLRTPVVHKH KGFYQEEEED 480 DSNEEDEDNE EGVAAQLAAE IKGFAEKFVK IENKKIEMIK DVERYRLEME NKRMEMILES 540 QQMLVETVNK AFGGSHKPHK LSAN

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

XKEAHFRTTE SPITILSRFL LAVTTTPHLQ PSPTTVATTA AYHTPPQFTE IXPSESPDFD  60
QLHLMATDTP SPPPTASHEE EEDNINQQPP TQQELVLSPP SPIEDVDQHQ QFENSNSPYS  120
PRTSVTKSEK PIDREHPPPE DVADEQEPVP TSPPPQDKML GLQQPSPPPS PSSFLQPSPP  180
PPPPPPPLPT EPEYPPENLS PGHESPISKK SPSSPKRDEH PLQSPNYRET PYPNPNPNSD  240
HESPSPSSPA TLQGNPSPKP HKSPKDPSPS PPPTAASPSS PPLLQAVASS SPTKQQILPW  300
THQETANLIQ AYQEKWYSLK KGPLKASQWE EVAITVAARC GYDEPTKTAK QCRHKIEKLR  360
KRYRAERGKP RSKATAWNFF KLMDNLEKGP LPISSSLPSM ELVEYQKPSN SNGKKRKNND  420
DGDSEFLVNK RSRSKISSNH HISNGSDARF SDGGHDRVMR GLRTPVVHKH KGFYQEEEED  480
DSNEEDEDNE EGVAAQLAAE IKGFAEKFVK IENKKIEMIK DVERYRLEME NKRMEMILES  540
QQMLVETVNK AFGGSHKPHK LSAN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023759231.1	0.0	uncharacterized protein LOC111907662
TrEMBL	A0A2J6LNT8	0.0	A0A2J6LNT8_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	4e-32	Trihelix family protein