PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011778
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29551.1 Da    PI: 8.2866
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679231PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-12196PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-311767151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss
  Lsa011778 17 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFSS 67
               79***********************************************96 PP
2K-box68.91.6e-23931849100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +e+ +++s++qe+ +Lk++++ L++  R++ Ge+++sL+ +eL++Le+qL+ slk+iR+ +++ ll+++ e+qk+e++l e nk+Lr +lee
  Lsa011778  93 KEDLQEQSSYQEYMRLKERYDALKQLERNYYGEEIDSLTTNELESLERQLNCSLKQIRTIRTQSLLDKLYEQQKMEHQLYESNKTLRLRLEE 184
                678899*********************************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-39968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.898969IPR002100Transcription factor, MADS-box
CDDcd002655.25E-421082No hitNo description
SuperFamilySSF554555.1E-321085IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-321131IPR002100Transcription factor, MADS-box
PfamPF003192.7E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-323146IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-324667IPR002100Transcription factor, MADS-box
PfamPF014864.9E-1894182IPR002487Transcription factor, K-box
PROSITE profilePS5129713.52398188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
XGGEERRTMG KGRLELKRIE NKINRQVTFA KRRNGLLKKA YELSVLCDAE VALIVFSTRG  60
KLYEFSSTSS MLKTLERYEK CSFGPPEQRK PAKEDLQEQS SYQEYMRLKE RYDALKQLER  120
NYYGEEIDSL TTNELESLER QLNCSLKQIR TIRTQSLLDK LYEQQKMEHQ LYESNKTLRL  180
RLEEESQAEA LQWDALANGM IYGHHQHQMS QPTRDAFYHA TGCKTTLQIG YQTEQMSGVT  240
STNVNHQVQG WPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-29831841103Developmental protein SEPALLATA 3
4ox0_B2e-29831841103Developmental protein SEPALLATA 3
4ox0_C2e-29831841103Developmental protein SEPALLATA 3
4ox0_D2e-29831841103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023771536.10.0agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotQ8LLR06e-97MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLA0A2J6KWQ11e-178A0A2J6KWQ1_LACSA; Uncharacterized protein
STRINGXP_004140534.11e-96(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.12e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]