PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011783
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 284aa    MW: 30880.3 Da    PI: 7.6305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681275PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-11167214455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Lsa011783 167 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 214
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-17161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.02E-11161218No hitNo description
PROSITE profilePS5088815.828163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-18163229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-11169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPPMMMNGG GFRSGNTGSS LCNLPEIWPF QINLGGGGGN AVAFGMGQLG DNSGGSGAFV  60
DNRDHVAVDD PMVVDQRGNS NQSKKRREDD DSSKGVSTSS RSNGNSMLDS DGKRLKSLAL  120
ENESESKPKP EPERSSGKKA ENSGKPSDPS KQDYIHVRAR RGQATDSHSL AERARREKIS  180
ERMKILQDLV PGCNKVIGKA LVLDEIINYI QSLQQQVEFL SMKLEAVTSR SHPSPQGFTS  240
KDFGQQTFEM TGVPFGAQPT REFSRGSSPE WLHMQIGGNF ERTS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740329.10.0transcription factor BHLH094-like
SwissprotQ69WS31e-72BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2J6K1990.0A0A2J6K199_LACSA; Uncharacterized protein
STRINGXP_010098235.11e-103(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.19e-80BIG PETAL P