PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011845
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 300aa    MW: 32466.4 Da    PI: 7.4662
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682519PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-375PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.5e-18169203135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Lsa011845 169 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 203
                *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-16163213IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13163215No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13167201IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.227167199IPR000679Zinc finger, GATA-type
CDDcd002022.98E-13168215No hitNo description
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
PfamPF003208.8E-16169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDMYGMSSAG QDYLGVDELF DFSGDRDDVF SSSAVNATDV FHNITASGSQ YQYGFNNNNN  60
TITNYHHQST DFTDHFCVPS DDVAELEWLS RFVDDSFSDF PTNNIAGTIN FRPQNASFHS  120
RSRSKRTRAP SNNNSWTTTP PVPTTPVSET SKASSSCDTT SESGVVRRCT HCASEKTPQW  180
RTGPLGPKTL CNACGVRFKS GRLVPEYRPA ASPTFXVNST LKLSPESNGA PSAKGGDGRR  240
PTPPAPPLPT SAAINAFGTP NLRRSTPPPP GATTTASWQQ LRGLLTLVRT VNGQETLNLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125RSRSKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739908.11e-160GATA transcription factor 4-like
TrEMBLA0A2J6K2241e-158A0A2J6K224_LACSA; GATA transcription factor
STRINGVIT_15s0021g02510.t012e-64(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-52GATA transcription factor 2