PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011874
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 321aa    MW: 35535.2 Da    PI: 5.817
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683851PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-30194PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18217251135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +Cg+ +Tp+WRrgp g+ktLCnaCG++y++ +l
  Lsa011874 217 CLHCGSDTTPQWRRGPMGPKTLCNACGVRYKSGRL 251
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-7013303IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011413.02211247IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-18211261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.8E-15215249IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-15215275No hitNo description
CDDcd002025.21E-16216267No hitNo description
PfamPF003202.1E-16217251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440217242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGSYFGAGEC FFEQQKPADF ITGGNQFTID DLLLDFPNDE DVVMNEAYYE SFNSNSADFS  60
SSNSSISGSE PQLSGNISSY SLSDSQFSGG ELCLPYDDLA ELEWLSSFTE ESFSSDDLHN  120
LQLISAANKA PATATATATD TSSSETTREY QHKTTGPNRI NSPIFQTNVL VPGKVRSKRS  180
RAAPCDWSSR LLLLKSSTTD INKPETTHRS DNSLRRCLHC GSDTTPQWRR GPMGPKTLCN  240
ACGVRYKSGR LVPEYRPAAS PSFVPAKHSN SHRKVMELRR QVELQNSQQQ LVNHISNFDG  300
CNAGDDYLIH RQIGPSFMHM I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759499.10.0GATA transcription factor 9-like
SwissprotP697817e-77GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A251U1A41e-159A0A251U1A4_HELAN; GATA transcription factor
STRINGXP_010249552.11e-104(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-60GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]