PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011965

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WRKY

Protein Properties

Length: 343aa MW: 39162.6 Da PI: 6.579

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685532	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	71.1	1.5e-22	156	216	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ ++++ r+YYrCt++ gC+++k+v+ ++++p +itY+g+H+++ Lsa011965 156 DDGHAWRKYGQKVILNAKHQRNYYRCTHKtdqGCRATKQVQMTEDEPPQYKITYSGHHTCN 216 8*************************99999************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-24	145	216	IPR003657	WRKY domain
PROSITE profile	PS50811	19.83	150	213	IPR003657	WRKY domain
SuperFamily	SSF118290	1.12E-23	151	216	IPR003657	WRKY domain
SMART	SM00774	4.7E-34	155	217	IPR003657	WRKY domain
Pfam	PF03106	5.4E-23	156	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
XRLLYYWEVS SRVVLLANRS HNKYCMESSC WPESLPSNRI KAIQKLTQGQ HLTSKLREML 60 RRSEKTEPDI NSVDDVVGEI LGMFDNTLSI LNSSSFEEVP DMPIGDIRSP GSWDDQKSEN 120 YGESTKTLTP LKVKRGCYKR RKDSWTSIKI TPRLIDDGHA WRKYGQKVIL NAKHQRNYYR 180 CTHKTDQGCR ATKQVQMTED EPPQYKITYS GHHTCNNLLR SPLIILDSPD HKDNSFVLSF 240 EGTGLNNNKQ VDSCFPSAKQ DPKEGFPSLV FRHNEASSSD NYLPWDLTTQ VPSEPMSMMS 300 SGLDHEDMIS SEVYSSTCST HGYEIDNIIG SNIFGDFPFE MCS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

XRLLYYWEVS SRVVLLANRS HNKYCMESSC WPESLPSNRI KAIQKLTQGQ HLTSKLREML  60
RRSEKTEPDI NSVDDVVGEI LGMFDNTLSI LNSSSFEEVP DMPIGDIRSP GSWDDQKSEN  120
YGESTKTLTP LKVKRGCYKR RKDSWTSIKI TPRLIDDGHA WRKYGQKVIL NAKHQRNYYR  180
CTHKTDQGCR ATKQVQMTED EPPQYKITYS GHHTCNNLLR SPLIILDSPD HKDNSFVLSF  240
EGTGLNNNKQ VDSCFPSAKQ DPKEGFPSLV FRHNEASSSD NYLPWDLTTQ VPSEPMSMMS  300
SGLDHEDMIS SEVYSSTCST HGYEIDNIIG SNIFGDFPFE MCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	4e-21	155	215	8	68	OsWRKY45
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023772872.1	0.0	probable WRKY transcription factor 70
TrEMBL	A0A2J6KTU3	0.0	A0A2J6KTU3_LACSA; Uncharacterized protein
STRING	EOY04438	1e-77	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	5e-46	WRKY DNA-binding protein 70