PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011991

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 300aa MW: 33847.4 Da PI: 9.4745

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58680707	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.8	1.7e-19	32	124	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqlea 87 +W+++e+ aLi+a+r ++ +l+rg+l++p+W+ev++ + ++++qC++k+e+l+kry+++ ++ + + s++++f+q++a Lsa011991 32 CWSHDETVALIDAYRGKWYSLQRGNLRAPHWQEVADGVavrcPLSDPPKTSIQCRHKMEKLRKRYRAEIQRIANTprGHRYPSSWVHFKQMDA 124 8*********************************9975554455589*************998887765213566789*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-20	31	125	No hit	No description
SMART	SM00595	1.1E-8	40	130	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MASSNSPSSS HEQTNPLAAK PPAASRRLPP PCWSHDETVA LIDAYRGKWY SLQRGNLRAP 60 HWQEVADGVA VRCPLSDPPK TSIQCRHKME KLRKRYRAEI QRIANTPRGH RYPSSWVHFK 120 QMDAMELGLS SSDPSVDPIN QEEDEVDERG DEENEDELFL YPKRIKQAVT LPLNRRYQGL 180 VGNGVTAGKR NGNGVRIRIP NIAAVTPPNT SFDDYPPPVN PHYRPGKRSR DGFVKEAFGG 240 EMNRKHGGGG GMKMRKEMEN DESHLMDGMV AAIQKLGDGF LKIEMMKMDM ARELESMRMK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023772776.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A2J6KU52	0.0	A0A2J6KU52_LACSA; Uncharacterized protein
STRING	Solyc01g088820.2.1	9e-75	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-45	Trihelix family protein