PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011992
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TALE
Protein Properties Length: 471aa    MW: 53022.3 Da    PI: 6.1066
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690107PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-51236PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42.1e-073764082254
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 +yp++e++++L +++gL+ +q+ +WF N+R +
  Lsa011992 376 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 408
                59*****************************87 PP
2ELK28.63.1e-10329350122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++++++++E++
  Lsa011992 329 ELKHELKQGYKEKIVDIREEIL 350
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.9E-20165209IPR005540KNOX1
PfamPF037903.8E-17167208IPR005540KNOX1
SMARTSM012561.6E-22219274IPR005541KNOX2
PfamPF037917.9E-17223273IPR005541KNOX2
PROSITE profilePS512139.969329349IPR005539ELK domain
PfamPF037891.1E-6329350IPR005539ELK domain
SMARTSM011886.1E-4329350IPR005539ELK domain
PROSITE profilePS5007111.677349412IPR001356Homeobox domain
SMARTSM003897.6E-11351416IPR001356Homeobox domain
SuperFamilySSF466895.56E-16351417IPR009057Homeodomain-like
CDDcd000862.04E-11352413No hitNo description
Gene3DG3DSA:1.10.10.607.3E-25356413IPR009057Homeodomain-like
PfamPF059201.4E-17369408IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAFHDNISHQ MALQHYADQQ QLTENVEVLR GILPSDHHHQ HHHLGQSSSS PDAGPKTSQS  60
PPPTWLNSAI LRQHNHHYGG DGSGGSFLHL QTTNSDSSNS NNHWLSPRPI DNDDSNRESM  120
FVSTINSENN LDENAMKLSQ RQSESDGNGN GNGNGGNHER DWEFAKCKAD ILSHPMYDQL  180
LSAHVSCLRI ATPVDQLPRI DAQLAQSQQV IAKYSVFGNH NQPLDDKDLN QFMAHYVVLL  240
SSFKEQLQQH VRVHAMEAVM ACWELEQSLQ SLTGVAPGEG TGATMSDDDE EQVDSDTNMF  300
DGGLDVSDSM GFGLPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG  360
DTTSLLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSTAA  420
KLNARVMPGE NRKWSVVLEN DNHTPGHSSK REIDCSDVVQ KVNEARGAND F
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759947.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotO223001e-169LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A2J6LMQ60.0A0A2J6LMQ6_LACSA; Uncharacterized protein
STRINGVIT_11s0118g00800.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-164KNOTTED1-like homeobox gene 3