PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012025
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HD-ZIP
Protein Properties Length: 278aa    MW: 30636.5 Da    PI: 8.3712
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686642PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-18134188256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tk q   Lee+F+ ++ ++ ++++eLA++l+L  rqV vWFqNrRa+ k
  Lsa012025 134 RKKLRLTKPQSALLEEAFKLHSSLNPKQKQELARELKLRPRQVEVWFQNRRARTK 188
                678899***********************************************98 PP
2HD-ZIP_I/II118.53.8e-38134223191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k q++lLEe F+ ++ L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+++n+rL+ke +eL+ +l
    Lsa012025 134 RKKLRLTKPQSALLEEAFKLHSSLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEMDFEHLKKCCETLRDDNRRLHKELQELK-AL 223
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-18116191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-16126191IPR009057Homeodomain-like
PROSITE profilePS5007116.908130190IPR001356Homeobox domain
SMARTSM003894.1E-15132194IPR001356Homeobox domain
PfamPF000461.2E-15134188IPR001356Homeobox domain
CDDcd000865.61E-16134191No hitNo description
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PfamPF021832.3E-9190224IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-20190233IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGFDGLSDEG LALGLSLNSS PSMVKPNSVG STKLPWVTET MASFEPSLTL GLSGDGNKKV  60
VVGGGGDDHG GLCRQDSTVI SGGGSSFSNV SVKREREVGS EESERVSNDN NYSRVMSTTS  120
VDDVEDDDGS INGRKKLRLT KPQSALLEEA FKLHSSLNPK QKQELARELK LRPRQVEVWF  180
QNRRARTKLK QTEMDFEHLK KCCETLRDDN RRLHKELQEL KALKSSQPFY MQLPAATLTM  240
CPSCERIGDT KSSAVKNPFN MAAKPHYFNS FTNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182190RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023764454.10.0homeobox-leucine zipper protein HAT22-like isoform X2
SwissprotP466046e-88HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2J6LCD90.0A0A2J6LCD9_LACSA; Uncharacterized protein
STRINGEOX917921e-101(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]