PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012066
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HSF
Protein Properties Length: 244aa    MW: 28091 Da    PI: 10.0019
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679463PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-54595PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.3e-33291202102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y +++d+++++++sw+++g  fvv+++ efa+++Lp+ Fkhsnf+SF+RQLn+YgF+k+++++         weF ++ F+kg+ke+l++i+
     Lsa012066  29 FLLKTYMLVDDPATDHVVSWNSDGMGFVVWQPAEFARDLLPTLFKHSNFSSFIRQLNTYGFRKTSTTR---------WEFCNERFHKGRKEQLCQIR 116
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
     Lsa012066 117 RRKS 120
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-3523113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3124118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-4925118IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3029118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVAEIRGSVD GHGAQLLVDF VSKSSPSPFL LKTYMLVDDP ATDHVVSWNS DGMGFVVWQP  60
AEFARDLLPT LFKHSNFSSF IRQLNTYGFR KTSTTRWEFC NERFHKGRKE QLCQIRRRKS  120
WINKPRPIAQ LTLKESDEDQ RSSSSNSLSS GYNILVDENH KLKKENKVLG LELVSIKKKC  180
KELIDLVGMY TSSSSSKKEE EEDERPKLFG VRLEVHGDKE RKRKRIEEVG ESARRILLSV  240
NVNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B9e-19271182104Putative transcription factor
5d5x_B9e-19271182104Putative transcription factor
5d5x_E9e-19271182104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731639.10.0heat stress transcription factor B-3
SwissprotO222302e-61HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2J6KKL11e-179A0A2J6KKL1_LACSA; Uncharacterized protein
STRINGPOPTR_0016s05680.11e-100(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-59heat shock transcription factor B3