PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012068
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 408aa    MW: 44365.7 Da    PI: 6.9268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688810PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-37057PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049276295221
                EETTTTEEESSHHHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                +C+ Cg s+++ ++L++H++
  Lsa012068 276 SCELCGISCNTYEMLRVHLS 295
                7*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.38E-973108No hitNo description
SMARTSM004511.9E-575109IPR003604Zinc finger, U1-type
SMARTSM003550.4478102IPR015880Zinc finger, C2H2-like
PfamPF128741.4E-779102No hitNo description
PROSITE patternPS00028080102IPR007087Zinc finger, C2H2
SuperFamilySSF576672.98E-7142177No hitNo description
SMARTSM004511.2E-4147181IPR003604Zinc finger, U1-type
SMARTSM003555.3150174IPR015880Zinc finger, C2H2-like
PfamPF128745.6E-7150174No hitNo description
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
SuperFamilySSF576671.9E-10188237No hitNo description
SMARTSM004510.0013203237IPR003604Zinc finger, U1-type
SMARTSM003551.3206230IPR015880Zinc finger, C2H2-like
PfamPF128741.3E-5207230No hitNo description
PROSITE patternPS000280208230IPR007087Zinc finger, C2H2
SuperFamilySSF576674.09E-10266305No hitNo description
SMARTSM004510.0019272306IPR003604Zinc finger, U1-type
SMARTSM003550.34275299IPR015880Zinc finger, C2H2-like
PfamPF128741.7E-5276299No hitNo description
PROSITE patternPS000280277299IPR007087Zinc finger, C2H2
SMARTSM004517.8E-4364398IPR003604Zinc finger, U1-type
SuperFamilySSF576674.76E-8365395No hitNo description
SMARTSM003553.6367391IPR015880Zinc finger, C2H2-like
PfamPF128741.4E-8368391No hitNo description
PROSITE patternPS000280369391IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MPSFTSYPTN NPNPDPNPPN ADASLYQYSH GFDGSEMQSA FELEEAAASQ NEATGNIGDE  60
AQHVVNTTTS QPESIEPIQC EVCNITCTNR DIFEKHTQGK KHMKNMQKIA ISSVIGPKVT  120
PPTATATSVG ELENKKHLLL QNGASVDKLL YCQTCNVVCN NQDAFHAHLA GRKHSSKAIM  180
QGASTNDVFN PTSNKGHEAR MNPDPLRCEL CKISCTSFEL LNTHLSGKKH LKKLRESEQI  240
SDLPLTFVTS LDTQRMQNQE STEGKAVISH EGNTLSCELC GISCNTYEML RVHLSGKKHQ  300
KNLEKSEKGI GPNTEQGMLQ DEGKEEGKVV NLVDGSNRKT KRVASDEELE AKRQKILQGG  360
AASNGLRTCT VCNVVCSSPA VYTSHLAGKK HAAMAVKQAE TGLTGQET
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735376.10.0zinc finger RNA-binding protein-like
TrEMBLA0A2J6KC410.0A0A2J6KC41_LACSA; Uncharacterized protein